PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal Das, Pawel Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska & Dariusz Plewczynski

BMC Bioinformatics – Published: 17 February 2021 https://doi.org/10.1186/s12859-021-03984-1

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Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows

Teresa Szczepi?ska, Ayatullah Faruk Mollah, and Dariusz Plewczynski

International Journal of Molecular Sciences – Published: 27 October 2021 https://doi.org/10.3390/ijms222111591

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Transcription factors: Bridge between cell signaling and gene regulation

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Paula Weidemüller, Maksim Kholmatov, Evangelia Petsalaki, Judith B. Zaugg

Proteomics – Published: 27 July 2021 https://doi.org/10.1002/pmic.202000034

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Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression

Erica S.M. Vos, Christian Valdes-Quezada, Yike Huang, Esther C.H. Uijttewaal, Peter H.L. Krijger, Wouter de Laat

Molecular Cell – Published: 30 June 2021 https://doi.org/10.1016/j.molcel.2021.06.008

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Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness

Tomas Pachano, Víctor Sánchez-Gaya, Thais Ealo, Maria Mariner-Faulí, Tore Bleckwehl, Helena G. Asenjo, Patricia Respuela, Sara Cruz-Molina, María Muñoz-San Martín, Endika Haro, Wilfred F. J. van IJcken, David Landeira & Alvaro Rada-Iglesias

Nature Genetics – Published: 28 June 2021 https://doi.org/10.1038/s41588-021-00888-x

 

 

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The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo

Giuliano Crispatzu, Rizwan Rehimi, Tomas Pachano, Tore Bleckwehl, Sara Cruz-Molina, Cally Xiao, Esther Mahabir, Hisham Bazzi & Alvaro Rada-Iglesias

Nature Communications – Published: 16 July 2021 https://doi.org/10.1038/s41467-021-24641-4

 

 

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Enhancer-associated H3K4 methylation safeguards in vitro germline competence

Tore Bleckwehl, Giuliano Crispatzu, Kaitlin Schaaf, Patricia Respuela, Michaela Bartusel, Laura Benson, Stephen J. Clark, Kristel M. Dorighi, Antonio Barral, Magdalena Laugsch, Wilfred F. J. van IJcken, Miguel Manzanares, Joanna Wysocka, Wolf Reik & Álvaro Rada-Iglesias

Nature Communications – Published: 01 October 2021 https://doi.org/10.5281/zenodo.5507612

 

 

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Epromoters function as a hub to recruit key transcription factors required for the inflammatory response

David Santiago-Algarra, Charbel Souaid, Himanshu Singh, Lan T. M. Dao, Saadat Hussain, Alejandra Medina-Rivera, Lucia Ramirez-Navarro, Jaime A. Castro-Mondragon, Nori Sadouni, Guillaume Charbonnier & Salvatore Spicuglia

Nature Communications – Published: 18 November 2021 https://doi.org/10.5281/zenodo.5507612

 

 

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NFnetFu: A novel workflow for microbiome data fusion

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VartikaBisht, Animesh Acharjee and Georgios V.Gkoutos

Computers in Biology and Medicine : Published: 8 June 2021, https://doi.org/10.1016/j.compbiomed.2021.104556 

 

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Marie CurieThis project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 860002. The information contained in this website reflects only the authors’ view. REA and EC are not responsible for any use that may be made of this information.